OHRD Catalog

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OTM Catalog

Transcript-level mRNAseq on the desktop with Docker (back)

Description:
This (all day) new workshop will explore the Tuxedo Suite #2 (Hisat2, StringTie, Ballgown) to analyze transcript-level analysis of bulk mRNA-seq experiments including differential gene expression.
We will run an analysis from data small enough for a Desktop/laptop computer with modern hardware (see requirements) and explore the “container” methods to use a Macintosh or a Windows computer to run Linux-based software thanks for containers (with Docker Desktop.) As such this workshop is as much a Next Gen Data analysis training as it is a Bioinformatics training that can be scaled to larger computers.
[Participants are expected to have a basic knowledge of command-line (bash shell or PowerShell) and a basic understanding of statistical methods.]

Contact Info:
Jean-Yves Sgro (jsgro@wisc.edu)

Official Course Website

No upcoming events.